PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010088821.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HSF
Protein Properties Length: 342aa    MW: 38161.5 Da    PI: 5.1061
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010088821.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.62.7e-35111032103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F++k+y++++d+++++lisw + +nsf+v+d+ +f++++Lp yFkh+nf+SFvRQLn+Y F+kv+ ++         weF++++F +g+k+ll++
  XP_010088821.1  11 FVMKTYQMVNDPTTDNLISWGRANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYKFRKVDPDR---------WEFANEWFLRGQKHLLKN 96 
                     9********************999*****************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i r+k++
  XP_010088821.1  97 ILRRKHN 103
                     **99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.2E-517100IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.58E-338100IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.4E-379100IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.9E-171134IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-2911100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-174961IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405074IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-176274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MEATNNIIAP FVMKTYQMVN DPTTDNLISW GRANNSFIVV DPLDFSQRIL PAYFKHNNFS  60
SFVRQLNTYK FRKVDPDRWE FANEWFLRGQ KHLLKNILRR KHNSGGGSSN NSKNNYYSNS  120
SICLMNLVNQ EDYSREDEEI VMEIAKLREE QEALEEELQG MTKRLETTER RPQQMMAFLY  180
KVVEDPDILP RMMLQNKERT NQLNEKKRHL AISSTTTSSN FSSPSVKTEE LEDDVGTTGV  240
VSSSSPETGF EMESFYQSSP SPEGPPVAGW WGQGGFTAVP SPLSAVQVSG IGNGAAVANS  300
AASIISGYGN ANGGSGQIGY FAESNRPPVQ PPYPFSLFGG GF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-24810026129Heat shock factor protein 1
5d5v_B8e-24810026129Heat shock factor protein 1
5d5v_D8e-24810026129Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010088821.10.0Heat stress transcription factor C-1
SwissprotQ9LV527e-91HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLW9QNY30.0W9QNY3_9R
STRINGVIT_11s0016g03940.t011e-115(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-78heat shock transcription factor C1